Projects

I love community projects and open source software.

I feel very comfortable in bash, python, R and I love to automate things with nextflow. Java is something that I have learned at university courses but I've rarely had the need to use it. I'm activly learning Rust. Below are some of the key projects that I've spent quite some time on.

maintainer nf-core
A community effort to collect a curated set of analysis pipelines and modules built using Nextflow

nf-core/viralmetagenome
A bioinformatics pipeline for untargeted viral genome reconstruction and identification of intra-host variants from metagenomic sequencing data

lasvphylo
A pipeline for rapid phylogenetic analysis of Lassa virus (LASV) sequences