Publications

I've been very fortunate to have worked with amazing people. Here are some of the results.

ORCiD Google Scholar

2025

Extensive cross-species transmission of pathogens and antibiotic resistance genes in mammals neglected by public health surveillance

Cell (2025)

Shi Y, Li Y, Li H, Haerheng A, Marcelino V, Lu M, Lemey P, Tang J, Bi Y, ... , Su S

nf-core/viralmetagenome: A Novel Pipeline for Untargeted Viral Genome Reconstruction

bioRxiv (2025)

Klaps J, Lemey P, nf-core community, Kafetzopoulou L

2024

spread.gl: visualizing pathogen dispersal in a high-performance browser application

Bioinformatics (2024)

Li Y, Bollen N, Hong S, Brusselmans M, Gambaro F, Klaps J, Suchard M, Rambaut A, Lemey P, ... , Baele G

2021

Large-scale genomic characterization of Bacteroides fragilis reveals multiple lineages associated with functional distinct traits

KU Leuven (2021)

Klaps J

2020

Candida metrosideri pro tempore sp. nov. and Candida ohialehuae pro tempore sp. nov., two antifungal-resistant yeasts associated with Metrosideros polymorpha flowers in Hawaii

PLOS ONE (2020)

Klaps J, de Vega C, Herrera C, Junker R, Lievens B, Álvarez-Pérez S

Towards a better understanding of the role of nectar-inhabiting yeasts in plant–animal interactions

Fungal Biology and Biotechnology (2020)

Klaps J, Lievens B, Álvarez-Pérez S

2019

Analysis of yeast diversity in floral microhabitats from Metrosideros polymorpha Gaud.

KU Leuven (2019)

Klaps J