Publications

I've been very fortunate to have worked with amazing people. Here are some of the results.

ORCiD Google Scholar

2025

nf-core/viralmetagenome: A Novel Pipeline for Untargeted Viral Genome Reconstruction

bioRxiv (2025)

Klaps J, Lemey P, nf-core community, Kafetzopoulou L

2024

spread.gl: visualizing pathogen dispersal in a high-performance browser application

Bioinformatics (2024)

Li Y, Bollen N, Hong S, Brusselmans M, Gambaro F, Klaps J, Suchard M, Rambaut A, Lemey P, ... , Baele G

2021

Large-scale genomic characterization of Bacteroides fragilis reveals multiple lineages associated with functional distinct traits

KU Leuven (2021)

Klaps J

2020

Candida metrosideri pro tempore sp. nov. and Candida ohialehuae pro tempore sp. nov., two antifungal-resistant yeasts associated with Metrosideros polymorpha flowers in Hawaii

PLOS ONE (2020)

Klaps J, de Vega C, Herrera C, Junker R, Lievens B, Álvarez-Pérez S

Towards a better understanding of the role of nectar-inhabiting yeasts in plant–animal interactions

Fungal Biology and Biotechnology (2020)

Klaps J, Lievens B, Álvarez-Pérez S

2019

Analysis of yeast diversity in floral microhabitats from Metrosideros polymorpha Gaud.

KU Leuven (2019)

Klaps J