HIV-1 subtype G phylogeographic tree

Source: R/data.R

A treedata object containing the maximum clade credibility (MCC) tree from a BEAST relaxed random walk (RRW) continuous phylogeographic analysis of HIV-1.

hiv1_tree

Format

A treedata object with phylogeographic annotations including:

location1

Latitude coordinate

location2

Longitude coordinate

height_mean

Mean node height (time before present)

height_median

Median node height

location1_0.80HPD

80 percent HPD intervals for latitude

location2_0.80HPD

80 percent HPD intervals for longitude

Source

BEAST phylogeographic analysis with relaxed random walk model

Examples

if (FALSE) { # \dontrun{
data(hiv1_tree)
autoplot(hiv1_tree)
} # }