Influenza A H3N2 antigenic cartography tree

Source: R/data.R

A treedata object containing the maximum clade credibility (MCC) tree from a BEAST continuous trait analysis of Influenza A H3N2 sequences. This dataset demonstrates using ggphylogeo with non-geographic continuous traits (antigenic dimensions).

h3n2_tree

Format

A treedata object with continuous trait annotations including:

antigenic1

First antigenic dimension coordinate

antigenic2

Second antigenic dimension coordinate

height_mean

Mean node height (time before present)

height_median

Median node height

antigenic1_0.80HPD

80 percent HPD intervals for dimension 1

antigenic2_0.80HPD

80 percent HPD intervals for dimension 2

Source

BEAST continuous trait analysis

Examples

if (FALSE) { # \dontrun{
data(h3n2_tree)
pgeo <- build_phylogeo(h3n2_tree, lon = "antigenic1", lat = "antigenic2")
} # }